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Broad Institute Inc comparative marker selection module genepattern
Comparative Marker Selection Module Genepattern, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/genepattern+comparative+marker+selection+module/genepattern+comparative+marker+selection+module/pm36831500-53-11-16
Average 90 stars, based on 1 article reviews
comparative marker selection module genepattern - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Imaging:

Article Title: Imaging genomic mapping of an invasive MRI phenotype predicts patient outcome and metabolic dysfunction: a TCGA glioma phenotype research group project
Article Snippet: .. Patients were assigned to classes based on the presence (Class A) or absence (Class B) of statistically significant invasion parameters to create an invasive imaging signature; imaging genomic analysis was subsequently performed using GenePattern Comparative Marker Selection module (Broad Institute). ..

Article Title: NIMG-12 GENE SIGNATURES ASSCOCIATED WITH DIFFUSION MRI ADC MAPPING OF GLIOBLASTOMA EDEMA/TUMOR INVASION
Article Snippet: .. Imaging genomic analysis was subsequently performed using GenePattern Comparative Marker Selection module (Broad Institute). ..

Marker:

Article Title: Imaging genomic mapping of an invasive MRI phenotype predicts patient outcome and metabolic dysfunction: a TCGA glioma phenotype research group project
Article Snippet: .. Patients were assigned to classes based on the presence (Class A) or absence (Class B) of statistically significant invasion parameters to create an invasive imaging signature; imaging genomic analysis was subsequently performed using GenePattern Comparative Marker Selection module (Broad Institute). ..

Article Title: Cell-State Transitions Regulated by SLUG Are Critical for Tissue Regeneration and Tumor Initiation
Article Snippet: Quality control and data analysis were carried out according to the instructions provided by Illumina. .. Differential gene expression between WT and Snai2LacZ/LacZ samples for each fraction was computed by GenePattern Comparative Marker Selection module (Broad Institute, MIT). ..

Article Title: NIMG-12 GENE SIGNATURES ASSCOCIATED WITH DIFFUSION MRI ADC MAPPING OF GLIOBLASTOMA EDEMA/TUMOR INVASION
Article Snippet: .. Imaging genomic analysis was subsequently performed using GenePattern Comparative Marker Selection module (Broad Institute). ..

Article Title: Maternal obesity programs mitochondrial and lipid metabolism gene expression in infant umbilical vein endothelial cells
Article Snippet: .. Normalized microarray data were analyzed (p, FDR) using GenePattern Comparative Marker Selection module (Broad Institute). .. Heatmaps were created using GENE-E (Broad Institute).

Selection:

Article Title: Imaging genomic mapping of an invasive MRI phenotype predicts patient outcome and metabolic dysfunction: a TCGA glioma phenotype research group project
Article Snippet: .. Patients were assigned to classes based on the presence (Class A) or absence (Class B) of statistically significant invasion parameters to create an invasive imaging signature; imaging genomic analysis was subsequently performed using GenePattern Comparative Marker Selection module (Broad Institute). ..

Article Title: Cell-State Transitions Regulated by SLUG Are Critical for Tissue Regeneration and Tumor Initiation
Article Snippet: Quality control and data analysis were carried out according to the instructions provided by Illumina. .. Differential gene expression between WT and Snai2LacZ/LacZ samples for each fraction was computed by GenePattern Comparative Marker Selection module (Broad Institute, MIT). ..

Article Title: NIMG-12 GENE SIGNATURES ASSCOCIATED WITH DIFFUSION MRI ADC MAPPING OF GLIOBLASTOMA EDEMA/TUMOR INVASION
Article Snippet: .. Imaging genomic analysis was subsequently performed using GenePattern Comparative Marker Selection module (Broad Institute). ..

Article Title: Maternal obesity programs mitochondrial and lipid metabolism gene expression in infant umbilical vein endothelial cells
Article Snippet: .. Normalized microarray data were analyzed (p, FDR) using GenePattern Comparative Marker Selection module (Broad Institute). .. Heatmaps were created using GENE-E (Broad Institute).

other:

Article Title: Distinct cachexia profiles in response to human pancreatic tumours in mouse limb and respiratory muscle
Article Snippet: These data were pre‐processed by the Boston University Microarray Core, then we performed differential gene expression analysis using the Broad Institute's GenePattern Comparative Marker Selection module in order to identify genes that were expressed at significantly different levels between sham and PDX muscle.

Gene Expression:

Article Title: Cell-State Transitions Regulated by SLUG Are Critical for Tissue Regeneration and Tumor Initiation
Article Snippet: Quality control and data analysis were carried out according to the instructions provided by Illumina. .. Differential gene expression between WT and Snai2LacZ/LacZ samples for each fraction was computed by GenePattern Comparative Marker Selection module (Broad Institute, MIT). ..

Microarray:

Article Title: Maternal obesity programs mitochondrial and lipid metabolism gene expression in infant umbilical vein endothelial cells
Article Snippet: .. Normalized microarray data were analyzed (p, FDR) using GenePattern Comparative Marker Selection module (Broad Institute). .. Heatmaps were created using GENE-E (Broad Institute).



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Image Search Results


 Comparative  clinical characteristics of the PUC and TCGA-OV cohorts.

Journal: Cancers

Article Title: Body Composition and Metabolic Dysfunction Really Matter for the Achievement of Better Outcomes in High-Grade Serous Ovarian Cancer

doi: 10.3390/cancers15041156

Figure Lengend Snippet: Comparative clinical characteristics of the PUC and TCGA-OV cohorts.

Article Snippet: Differential expression analyses were carried out using raw counts and the comparative marker selection module (genepattern, Broad Institute, Cambridge, MA, USA [ ]) to calculate the significant differences in gene expression between classes.

Techniques: Imaging

Comparative progression-free (PFS; A ) and overall survival (OS; B ) curves, prevalence of different TCGA-OV molecular subtypes ( C ), tumor microenvironment (TME) subtypes (desert [D], fibrotic [F], immune-enriched non-fibrotic [IE], and immune-enriched fibrotic [IE/F]; ( D ), immune subtypes ( E ), tumor mutation burden level (TMB; F ), stemness subtype ( G ), ESTIMATE score ( H ), and prevalence of carcinoma ecotypes (CE, I ) and plasma cell (PC) states (S, J ) according to obesity and lipid metabolism clustering using RNA-seq data from the TCGA-OV cohort.

Journal: Cancers

Article Title: Body Composition and Metabolic Dysfunction Really Matter for the Achievement of Better Outcomes in High-Grade Serous Ovarian Cancer

doi: 10.3390/cancers15041156

Figure Lengend Snippet: Comparative progression-free (PFS; A ) and overall survival (OS; B ) curves, prevalence of different TCGA-OV molecular subtypes ( C ), tumor microenvironment (TME) subtypes (desert [D], fibrotic [F], immune-enriched non-fibrotic [IE], and immune-enriched fibrotic [IE/F]; ( D ), immune subtypes ( E ), tumor mutation burden level (TMB; F ), stemness subtype ( G ), ESTIMATE score ( H ), and prevalence of carcinoma ecotypes (CE, I ) and plasma cell (PC) states (S, J ) according to obesity and lipid metabolism clustering using RNA-seq data from the TCGA-OV cohort.

Article Snippet: Differential expression analyses were carried out using raw counts and the comparative marker selection module (genepattern, Broad Institute, Cambridge, MA, USA [ ]) to calculate the significant differences in gene expression between classes.

Techniques: Mutagenesis, Clinical Proteomics, RNA Sequencing